Add root scan prompt options (#734)

pyproject.toml

@@ -34,8 +34,6 @@ classifiers = [
 ]
 dependencies = [
   "openai-agents[litellm]==0.14.6",
-  "openai>=2.26.0,<2.45",
-  "litellm[proxy]",
   "pydantic>=2.11.3",
   "pydantic-settings>=2.13.0",
   "rich",

strix/agents/factory.py

@@ -41,7 +41,7 @@ from strix.tools.proxy.tools import (
     view_request,
     view_sitemap_entry,
 )
-from strix.tools.reporting.tool import create_dependency_report, create_vulnerability_report
+from strix.tools.reporting.tool import create_vulnerability_report
 from strix.tools.thinking.tool import think
 from strix.tools.todo.tools import (
     create_todo,
@@ -335,7 +335,6 @@ _BASE_TOOLS: tuple[Tool, ...] = (
     delete_note,
     web_search,
     create_vulnerability_report,
-    create_dependency_report,
     list_requests,
     view_request,
     repeat_request,

strix/agents/prompt.py

@@ -7,7 +7,7 @@ from typing import Any
 
 from jinja2 import Environment, FileSystemLoader, select_autoescape
 
-from strix.skills import get_available_skills, load_skills, skill_search_dirs
+from strix.skills import get_available_skills, load_skills
 from strix.utils.resource_paths import get_strix_resource_path
 
 
@@ -69,9 +69,9 @@ def render_system_prompt(
     """Render the system prompt. Returns empty string on template failure."""
     try:
         prompt_dir = get_strix_resource_path("agents", _PROMPT_DIRNAME)
-        loader_dirs = [prompt_dir, *skill_search_dirs()]
+        skills_dir = get_strix_resource_path("skills")
         env = Environment(
-            loader=FileSystemLoader(loader_dirs),
+            loader=FileSystemLoader([prompt_dir, skills_dir]),
             autoescape=select_autoescape(
                 enabled_extensions=(),
                 default_for_string=False,

strix/report/dedupe.py

@@ -4,7 +4,6 @@ from __future__ import annotations
 
 import json
 import logging
-import re
 from typing import TYPE_CHECKING, Any
 
 from agents.model_settings import ModelSettings
@@ -52,11 +51,6 @@ CRITICAL DEDUPLICATION RULES:
    - One report is more thorough than another
    - Minor variations in technical analysis
 
-4. DEPENDENCY-CVE reports use package identity:
-   - Same CVE and same package/ecosystem is a duplicate
-   - Same CVE but different package/ecosystem is NOT a duplicate
-   - Same package/ecosystem but different CVE is NOT a duplicate
-
 COMPARISON GUIDELINES:
 - Focus on the technical root cause, not surface-level similarities
 - Same vulnerability type (SQLi, XSS) doesn't mean duplicate - location matters
@@ -107,8 +101,6 @@ def _prepare_report_for_comparison(report: dict[str, Any]) -> dict[str, Any]:
         "poc_description",
         "endpoint",
         "method",
-        "cve",
-        "dependency_metadata",
     ]
 
     cleaned = {}
@@ -122,112 +114,6 @@ def _prepare_report_for_comparison(report: dict[str, Any]) -> dict[str, Any]:
     return cleaned
 
 
-def _dependency_identity(report: dict[str, Any]) -> tuple[str, str, str] | None:
-    metadata = report.get("dependency_metadata")
-    if not isinstance(metadata, dict):
-        return None
-
-    raw_cve = report.get("cve")
-    raw_package = metadata.get("package_name")
-    if not raw_cve or not raw_package:
-        return None
-
-    cve = str(raw_cve).strip().upper()
-    ecosystem = str(metadata.get("package_ecosystem") or "").strip().lower()
-    package_name = str(raw_package).strip().lower()
-    if not cve or not package_name:
-        return None
-    return cve, ecosystem, package_name
-
-
-def _report_cve(report: dict[str, Any]) -> str:
-    return str(report.get("cve") or "").strip().upper()
-
-
-def _legacy_report_mentions_package(
-    report: dict[str, Any],
-    *,
-    ecosystem: str,
-    package_name: str,
-) -> bool:
-    fields = [
-        "title",
-        "description",
-        "impact",
-        "target",
-        "technical_analysis",
-        "poc_description",
-        "evidence",
-    ]
-    haystack = " ".join(str(report.get(field) or "") for field in fields).lower()
-    package_pattern = rf"(?<![\w@./-]){re.escape(package_name)}(?![\w@./-])"
-    if re.search(package_pattern, haystack) is None:
-        return False
-    if not ecosystem:
-        return True
-    ecosystem_pattern = rf"(?<![\w@./-]){re.escape(ecosystem)}(?![\w@./-])"
-    return re.search(ecosystem_pattern, haystack) is not None
-
-
-def _check_dependency_duplicate(
-    candidate: dict[str, Any],
-    existing_reports: list[dict[str, Any]],
-) -> dict[str, Any] | None:
-    candidate_identity = _dependency_identity(candidate)
-    if candidate_identity is None:
-        return None
-
-    cve, ecosystem, package_name = candidate_identity
-    found_legacy_same_cve = False
-    for report in existing_reports:
-        report_identity = _dependency_identity(report)
-        if report_identity is not None:
-            report_cve, report_ecosystem, report_package_name = report_identity
-            if (report_cve, report_package_name) != (cve, package_name):
-                continue
-            if report_ecosystem == ecosystem:
-                return {
-                    "is_duplicate": True,
-                    "duplicate_id": str(report.get("id") or "")[:64],
-                    "confidence": 1.0,
-                    "reason": "Same dependency CVE/package identity",
-                }
-            if not report_ecosystem or not ecosystem:
-                return {
-                    "is_duplicate": True,
-                    "duplicate_id": str(report.get("id") or "")[:64],
-                    "confidence": 1.0,
-                    "reason": "Same dependency CVE/package identity with missing ecosystem",
-                }
-            continue
-
-        if _report_cve(report) != cve:
-            continue
-        found_legacy_same_cve = True
-        if _legacy_report_mentions_package(
-            report,
-            ecosystem=ecosystem,
-            package_name=package_name,
-        ):
-            return {
-                "is_duplicate": True,
-                "duplicate_id": str(report.get("id") or "")[:64],
-                "confidence": 1.0,
-                "reason": "Same dependency CVE/package identity in legacy report",
-            }
-
-    if found_legacy_same_cve:
-        return None
-
-    package_label = f"{ecosystem}/{package_name}" if ecosystem else package_name
-    return {
-        "is_duplicate": False,
-        "duplicate_id": "",
-        "confidence": 1.0,
-        "reason": f"No existing dependency report for {cve} in {package_label}",
-    }
-
-
 def _parse_dedupe_response(content: str) -> dict[str, Any]:
     text = content.strip()
     if text.startswith("```"):
@@ -279,10 +165,6 @@ async def check_duplicate(
             "reason": "No existing reports to compare against",
         }
 
-    dependency_duplicate = _check_dependency_duplicate(candidate, existing_reports)
-    if dependency_duplicate is not None:
-        return dependency_duplicate
-
     try:
         settings = load_settings()
         model_name = settings.llm.model

strix/report/state.py

@@ -212,9 +212,6 @@ class ReportState:
         poc_description: str | None = None,
         poc_script_code: str | None = None,
         remediation_steps: str | None = None,
-        evidence: str | None = None,
-        assumptions: str | None = None,
-        fix_effort: str | None = None,
         cvss: float | None = None,
         cvss_breakdown: dict[str, str] | None = None,
         endpoint: str | None = None,
@@ -222,9 +219,6 @@ class ReportState:
         cve: str | None = None,
         cwe: str | None = None,
         code_locations: list[dict[str, Any]] | None = None,
-        fix_pr_body: str | None = None,
-        finding_class: str | None = None,
-        dependency_metadata: dict[str, str] | None = None,
         agent_id: str | None = None,
         agent_name: str | None = None,
     ) -> str:
@@ -251,12 +245,6 @@ class ReportState:
             report["poc_script_code"] = poc_script_code.strip()
         if remediation_steps:
             report["remediation_steps"] = remediation_steps.strip()
-        if evidence:
-            report["evidence"] = evidence.strip()
-        if assumptions:
-            report["assumptions"] = assumptions.strip()
-        if fix_effort:
-            report["fix_effort"] = fix_effort.strip().lower()
         if cvss is not None:
             report["cvss"] = cvss
         if cvss_breakdown:
@@ -271,11 +259,6 @@ class ReportState:
             report["cwe"] = cwe.strip()
         if code_locations:
             report["code_locations"] = code_locations
-        if fix_pr_body:
-            report["fix_pr_body"] = fix_pr_body.strip()
-        report["finding_class"] = (finding_class or "dynamic").strip().lower()
-        if dependency_metadata:
-            report["dependency_metadata"] = dependency_metadata
         if agent_id:
             report["agent_id"] = agent_id
         if agent_name:

strix/skills/__init__.py

@@ -1,8 +1,6 @@
 import logging
 import re
-from collections import Counter
 from collections.abc import Iterator
-from pathlib import Path
 
 from strix.utils.resource_paths import get_strix_resource_path
 
@@ -12,82 +10,20 @@ logger = logging.getLogger(__name__)
 _FRONTMATTER_PATTERN = re.compile(r"^---\s*\n.*?\n---\s*\n", re.DOTALL)
 
 _INTERNAL_SKILL_CATEGORIES: frozenset[str] = frozenset({"scan_modes", "coordination"})
-_ROOT_SKILL_CATEGORY = "root"
-
-_EXTRA_SKILL_DIRS: list[Path] = []
-
-
-def register_skill_dir(path: str | Path) -> None:
-    """Add a directory searched for skills ahead of the built-in set.
-
-    The directory uses the same layout as the packaged skills
-    (``<root>/<category>/<name>.md``). Skills found in a registered
-    directory shadow packaged skills with the same relative path, so
-    callers can both add new skills and override existing ones without
-    editing the package. The most recently registered directory has the
-    highest precedence.
-    """
-    resolved = Path(path)
-    if resolved not in _EXTRA_SKILL_DIRS:
-        _EXTRA_SKILL_DIRS.append(resolved)
-        logger.info("Registered extra skill dir: %s", resolved)
-
-
-def registered_skill_dirs() -> tuple[Path, ...]:
-    """Return registered extra skill directories, highest precedence first."""
-    return tuple(reversed(_EXTRA_SKILL_DIRS))
-
-
-def skill_search_dirs() -> tuple[Path, ...]:
-    """All existing skill roots, highest precedence first (built-in last)."""
-    roots = [d for d in registered_skill_dirs() if d.is_dir()]
-    builtin = get_strix_resource_path("skills")
-    if builtin.is_dir():
-        roots.append(builtin)
-    return tuple(roots)
 
 
 def _iter_user_skill_files() -> Iterator[tuple[str, str]]:
     """Yield ``(category_name, skill_name)`` for every user-selectable skill."""
-    seen: set[tuple[str, str]] = set()
-    for skills_dir in skill_search_dirs():
-        for file_path in sorted(skills_dir.glob("*.md")):
-            if file_path.name.startswith("__") or file_path.name == "README.md":
-                continue
-            key = (_ROOT_SKILL_CATEGORY, file_path.stem)
-            if key in seen:
-                continue
-            seen.add(key)
-            yield key
-
-        for category_dir in sorted(skills_dir.iterdir()):
-            if not category_dir.is_dir() or category_dir.name.startswith("__"):
-                continue
-            if category_dir.name in _INTERNAL_SKILL_CATEGORIES:
-                continue
-            for file_path in sorted(category_dir.glob("*.md")):
-                key = (category_dir.name, file_path.stem)
-                if key in seen:
-                    continue
-                seen.add(key)
-                yield key
-
-
-def _is_selectable_root_skill_file(file_path: Path) -> bool:
-    return file_path.suffix == ".md" and not (
-        file_path.name.startswith("__") or file_path.name == "README.md"
-    )
-
-
-def _qualified_skill_file(skills_dir: Path, category: str, name: str) -> Path | None:
-    if category == _ROOT_SKILL_CATEGORY:
-        candidate = skills_dir / f"{name}.md"
-        if candidate.exists() and _is_selectable_root_skill_file(candidate):
-            return candidate
-        return None
-
-    candidate = skills_dir / category / f"{name}.md"
-    return candidate if candidate.exists() else None
+    skills_dir = get_strix_resource_path("skills")
+    if not skills_dir.exists():
+        return
+    for category_dir in sorted(skills_dir.iterdir()):
+        if not category_dir.is_dir() or category_dir.name.startswith("__"):
+            continue
+        if category_dir.name in _INTERNAL_SKILL_CATEGORIES:
+            continue
+        for file_path in sorted(category_dir.glob("*.md")):
+            yield category_dir.name, file_path.stem
 
 
 def get_all_skill_names() -> set[str]:
@@ -95,54 +31,6 @@ def get_all_skill_names() -> set[str]:
     return {name for _, name in _iter_user_skill_files()}
 
 
-def _get_all_skill_keys() -> set[str]:
-    keys: set[str] = set()
-    for category, name in _iter_user_skill_files():
-        keys.add(f"{category}/{name}")
-    return keys
-
-
-def _get_ambiguous_skill_names() -> set[str]:
-    counts = Counter(name for _, name in _iter_user_skill_files())
-    return {name for name, count in counts.items() if count > 1}
-
-
-def _qualified_skill_files(skill_name: str) -> list[Path]:
-    category, _, name = skill_name.partition("/")
-    for skills_dir in skill_search_dirs():
-        candidate = _qualified_skill_file(skills_dir, category, name)
-        if candidate is not None:
-            return [candidate]
-    return []
-
-
-def _bare_skill_files(skill_name: str) -> list[Path]:
-    seen: set[tuple[str, str]] = set()
-    candidates: list[Path] = []
-    for skills_dir in skill_search_dirs():
-        for category_dir in sorted(skills_dir.iterdir()):
-            if not category_dir.is_dir() or category_dir.name.startswith("__"):
-                continue
-            if category_dir.name in _INTERNAL_SKILL_CATEGORIES:
-                continue
-            key = (category_dir.name, skill_name)
-            if key in seen:
-                continue
-            candidate = category_dir / f"{skill_name}.md"
-            if candidate.exists():
-                seen.add(key)
-                candidates.append(candidate)
-
-        key = (_ROOT_SKILL_CATEGORY, skill_name)
-        if key in seen:
-            continue
-        candidate = _qualified_skill_file(skills_dir, _ROOT_SKILL_CATEGORY, skill_name)
-        if candidate is not None:
-            seen.add(key)
-            candidates.append(candidate)
-    return candidates
-
-
 def get_available_skills() -> dict[str, list[str]]:
     grouped: dict[str, list[str]] = {}
     for category, name in _iter_user_skill_files():
@@ -164,51 +52,48 @@ def validate_requested_skills(skill_list: list[str], max_skills: int = 5) -> str
     if not skill_list:
         return None
     available = get_all_skill_names()
-    available_keys = _get_all_skill_keys()
-    invalid = sorted({s for s in skill_list if s not in available and s not in available_keys})
+    invalid = sorted({s for s in skill_list if s not in available})
     if invalid:
         return f"Invalid skill name(s): {invalid}. Available skills: {sorted(available)}"
-    ambiguous = sorted({s for s in skill_list if "/" not in s} & _get_ambiguous_skill_names())
-    if ambiguous:
-        return (
-            f"Ambiguous skill name(s): {ambiguous}. Use category-qualified names from: "
-            f"{sorted(available_keys)}"
-        )
     return None
 
 
-def _candidate_skill_files(skill_name: str) -> list[Path]:
-    """Resolve *skill_name* to effective matching files."""
-    if "/" in skill_name:
-        return _qualified_skill_files(skill_name)
-    return _bare_skill_files(skill_name)
-
-
 def load_skills(skill_names: list[str]) -> dict[str, str]:
     """Load skill markdown bodies (frontmatter stripped) by name.
 
-    Skill files live at ``strix/skills/<category>/<name>.md`` (or any
-    directory added via :func:`register_skill_dir`, searched first).
-    Names can be ``"name"`` (any category), ``"category/name"``, or a
-    bare file at the skills root. Missing skills are logged and skipped.
+    Skill files live at ``strix/skills/<category>/<name>.md``. Names
+    can be ``"name"`` (any category), ``"category/name"``, or a bare
+    file at the skills root. Missing skills are logged and skipped.
     """
-    search_dirs = skill_search_dirs()
-    if not search_dirs:
+    skills_dir = get_strix_resource_path("skills")
+    if not skills_dir.exists():
         return {}
 
+    by_category: dict[str, str] = {}
+    for category_dir in skills_dir.iterdir():
+        if not category_dir.is_dir() or category_dir.name.startswith("__"):
+            continue
+        for file_path in category_dir.glob("*.md"):
+            by_category[file_path.stem] = f"{category_dir.name}/{file_path.stem}.md"
+
     skill_content: dict[str, str] = {}
     for skill_name in skill_names:
-        candidates = _candidate_skill_files(skill_name)
-        if not candidates:
+        rel_path: str | None
+        if "/" in skill_name:
+            rel_path = f"{skill_name}.md"
+        elif skill_name in by_category:
+            rel_path = by_category[skill_name]
+        elif (skills_dir / f"{skill_name}.md").exists():
+            rel_path = f"{skill_name}.md"
+        else:
+            rel_path = None
+
+        if rel_path is None or not (skills_dir / rel_path).exists():
             logger.warning("Skill not found: %s", skill_name)
             continue
-        if len(candidates) > 1:
-            logger.warning("Ambiguous skill name %s; use a category-qualified name", skill_name)
-            continue
-        file_path = candidates[0]
 
         try:
-            content = file_path.read_text(encoding="utf-8")
+            content = (skills_dir / rel_path).read_text(encoding="utf-8")
         except (OSError, ValueError) as e:
             logger.warning("Failed to load skill %s: %s", skill_name, e)
             continue

strix/tools/finish/tool.py

@@ -115,8 +115,8 @@ async def finish_scan(
     **Calling this multiple times overwrites the previous report.**
     Make the single call comprehensive.
 
-    **Report output rules** (this content may be rendered into generated
-    reports):
+    **Customer-facing report rules** (this output is rendered into the
+    final PDF the client sees):
 
     - Never mention internal infrastructure: no local/absolute paths
       (``/workspace/...``), no agent names, no sandbox/orchestrator/
@@ -140,74 +140,6 @@ async def finish_scan(
           (Immediate / Short-term / Medium-term), each with concrete
           remediation steps. End with retest/validation guidance.
 
-    - **Formatting — use markdown in every field.** These fields may be
-      rendered into generated reports, so structure them clearly: lead
-      each section with a short ``# Heading``, use ``**bold**`` for labels/emphasis,
-      ``inline code`` for identifiers/paths/parameters, bullet or
-      numbered lists for enumerations, and fenced code blocks
-      (```` ```language ````) for any code/payload excerpts. Never emit
-      one flat wall of prose or leave code unformatted.
-    - If **zero** vulnerabilities were found, say so plainly and
-      characterize the posture positively; ``technical_analysis`` should
-      summarize the areas tested and confirm no issues, and
-      ``recommendations`` should focus on general hardening.
-
-    Example (abbreviated — mirror this structure, not the wording)::
-
-        executive_summary:
-            # Executive Summary
-
-            An external assessment of the **Acme Customer Portal**
-            identified multiple weaknesses that could lead to
-            unauthorized access to customer data.
-
-            **Overall risk posture:** Elevated.
-
-            **Key findings**
-            - Confirmed SSRF in a URL-preview feature reaching internal
-              network ranges.
-            - Broken tenant isolation enabling cross-tenant data access.
-
-            **Business impact**
-            - Potential exposure of customer records across tenants.
-
-        methodology:
-            # Methodology
-
-            Conducted per the **OWASP WSTG**.
-
-            **Engagement type:** Gray-box external test.
-            **Scope:** `https://app.acme.example`, `.../api/v1/`.
-
-            **Activities:** recon, authn/session review, authorization
-            and tenant-isolation testing, input/SSRF testing.
-
-        technical_analysis:
-            # Technical Analysis
-
-            **Severity model** reflects exploitability x impact.
-
-            1. **SSRF in URL preview** (Critical) — insufficient
-               destination validation; reaches link-local addresses.
-            2. **Broken tenant isolation** (High) — object identifiers
-               accepted without ownership checks.
-
-            **Systemic themes:** authorization enforced inconsistently;
-            no deny-by-default egress policy.
-
-        recommendations:
-            # Recommendations
-
-            **Immediate**
-            1. Remediate SSRF: enforce a destination allowlist,
-               deny-by-default, re-validate on every redirect hop.
-
-            **Short-term**
-            2. Centralize authorization with deny-by-default middleware.
-
-            **Retest & validation:** re-test immediate items to confirm
-            SSRF and tenant-isolation controls hold.
-
     Args:
         executive_summary: Business-level summary for leadership.
         methodology: Frameworks, scope, and approach.

strix/tools/reporting/tool.py

@@ -148,12 +148,8 @@ _REQUIRED_FIELDS = {
     "poc_description": "PoC description cannot be empty",
     "poc_script_code": "PoC script/code is REQUIRED - provide the actual exploit/payload",
     "remediation_steps": "Remediation steps cannot be empty",
-    "evidence": "Evidence cannot be empty - provide concrete proof of the finding",
-    "assumptions": "Assumptions cannot be empty - state exploitability prerequisites",
 }
 
-_VALID_FIX_EFFORT = frozenset({"trivial", "low", "medium", "high"})
-
 
 async def _do_create(  # noqa: PLR0912
     *,
@@ -165,16 +161,12 @@ async def _do_create(  # noqa: PLR0912
     poc_description: str,
     poc_script_code: str,
     remediation_steps: str,
-    evidence: str,
-    assumptions: str,
-    fix_effort: str,
     cvss_breakdown: dict[str, str],
     endpoint: str | None,
     method: str | None,
     cve: str | None,
     cwe: str | None,
     code_locations: list[dict[str, Any]] | None,
-    fix_pr_body: str | None = None,
     agent_id: str | None = None,
     agent_name: str | None = None,
 ) -> dict[str, Any]:
@@ -188,20 +180,11 @@ async def _do_create(  # noqa: PLR0912
         "poc_description": poc_description,
         "poc_script_code": poc_script_code,
         "remediation_steps": remediation_steps,
-        "evidence": evidence,
-        "assumptions": assumptions,
     }
     for name, msg in _REQUIRED_FIELDS.items():
         if not str(fields.get(name) or "").strip():
             errors.append(msg)
 
-    fix_effort = (fix_effort or "").strip().lower()
-    if fix_effort not in _VALID_FIX_EFFORT:
-        errors.append(
-            f"Invalid fix_effort: {fix_effort!r}. "
-            f"Must be one of: {sorted(_VALID_FIX_EFFORT)}"
-        )
-
     if not isinstance(cvss_breakdown, dict) or not cvss_breakdown:
         errors.append("cvss_breakdown: must be an object with the 8 CVSS metrics")
         cvss_breakdown = {}
@@ -285,9 +268,6 @@ async def _do_create(  # noqa: PLR0912
             poc_description=poc_description,
             poc_script_code=poc_script_code,
             remediation_steps=remediation_steps,
-            evidence=evidence,
-            assumptions=assumptions,
-            fix_effort=fix_effort,
             cvss=cvss_score,
             cvss_breakdown=cvss_breakdown,
             endpoint=endpoint,
@@ -295,7 +275,6 @@ async def _do_create(  # noqa: PLR0912
             cve=cve,
             cwe=cwe,
             code_locations=parsed_locations,
-            fix_pr_body=fix_pr_body,
             agent_id=agent_id if isinstance(agent_id, str) else None,
             agent_name=agent_name if isinstance(agent_name, str) else None,
         )
@@ -330,16 +309,12 @@ async def create_vulnerability_report(
     poc_description: str,
     poc_script_code: str,
     remediation_steps: str,
-    evidence: str,
-    assumptions: str,
-    fix_effort: str,
     cvss_breakdown: dict[str, str],
     endpoint: str | None = None,
     method: str | None = None,
     cve: str | None = None,
     cwe: str | None = None,
     code_locations: list[dict[str, Any]] | None = None,
-    fix_pr_body: str | None = None,
 ) -> str:
     """File a vulnerability report — one report per fully-verified finding.
 
@@ -358,24 +333,16 @@ async def create_vulnerability_report(
     get a ``duplicate_of`` response, do NOT retry — move on to other
     areas.
 
-    **Report output rules** (this content may be rendered into generated
-    reports):
+    **Customer-facing report rules** (the report is PDF-rendered for
+    delivery):
 
     - No internal/system details: never mention paths like
       ``/workspace``, internal tools, agents, sandboxes, models, system
       prompts, internal errors / stack traces, or tester environment.
-      Never leak internal identifiers (proxy request IDs, internal
-      report IDs) into any field.
     - Tone: formal, objective, third-person, vendor-neutral, concise.
-    - **Use markdown in every text field**: ``**bold**`` for emphasis,
-      ``inline code`` for identifiers/values/parameters, and fenced
-      code blocks (```` ```language ````) for any code/payload/HTTP
-      excerpt. Never leave code bare/unformatted. When referencing a
-      file, annotate the fence, e.g.
-      ```` ```python title=app.py startLineNumber=42 endLineNumber=50 ````.
-    - Field discipline: ``poc_description`` is steps only — NO code (all
-      code goes in ``poc_script_code``); ``remediation_steps`` is prose
-      only — NO code/diffs (code fixes go in ``code_locations``).
+    - Standard finding structure: Overview → Severity & CVSS →
+      Affected assets → Technical details → PoC (steps + code) →
+      Impact → Remediation → Evidence (in technical_analysis).
     - Numbered steps allowed only in PoC and Remediation sections.
     - Avoid hedging language; be precise and non-vague.
 
@@ -444,16 +411,9 @@ async def create_vulnerability_report(
         impact: What an attacker achieves; business risk; data at risk.
         target: Affected URL / domain / repository.
         technical_analysis: The mechanism and root cause.
-        poc_description: Step-by-step reproduction (steps only, no code).
+        poc_description: Step-by-step reproduction.
         poc_script_code: Working PoC (Python preferred).
-        remediation_steps: Specific, actionable fix (prose, no code).
-        evidence: Concrete proof the issue is real and exploitable —
-            request/response excerpts, observed behavior, tool output.
-            Use fenced code blocks; no internal identifiers/paths.
-        assumptions: Short note on the assumptions/prerequisites that
-            make this finding impactful or exploitable (e.g. "assumes an
-            authenticated low-privilege user").
-        fix_effort: One of ``trivial`` / ``low`` / ``medium`` / ``high``.
+        remediation_steps: Specific, actionable fix.
         cvss_breakdown: 8-metric object per the format above.
         endpoint: API path / Git path (e.g. ``/api/login``).
         method: HTTP method when relevant.
@@ -522,47 +482,6 @@ async def create_vulnerability_report(
             - Padding ``fix_before`` with surrounding context lines
               that aren't part of the fix.
             - Duplicating the same change across multiple locations.
-        fix_pr_body: Optional. When source is available and you have a
-            concrete fix, a markdown PR-description body proposing the
-            fix (summary + rationale). Prose/markdown only — the code
-            change itself belongs in ``code_locations``. Omit for
-            black-box findings.
-
-    Example (abbreviated — mirror this structure)::
-
-        title: "Reflected XSS in /search q parameter"
-        description:
-            The **`q`** parameter of `/search` reflects user input into
-            the HTML response without encoding, allowing script
-            injection.
-        technical_analysis:
-            The handler interpolates `q` directly into the page body:
-
-            ```python title=views.py startLineNumber=42 endLineNumber=44
-            html = f"<h2>Results for {q}</h2>"
-            return HttpResponse(html)
-            ```
-
-            No output encoding is applied, so `<script>` executes.
-        poc_description:
-            1. Navigate to `/search?q=<payload>`.
-            2. Observe the payload executes in the victim's browser.
-        poc_script_code:
-            ```
-            GET /search?q=<script>alert(document.domain)</script>
-            ```
-        evidence:
-            Response echoes the payload verbatim:
-
-            ```html
-            <h2>Results for <script>alert(document.domain)</script></h2>
-            ```
-        assumptions:
-            Assumes a victim can be induced to open a crafted link.
-        remediation_steps:
-            Context-encode all user input rendered into HTML; prefer the
-            template engine's auto-escaping over string interpolation.
-        fix_effort: "low"
     """
     inner = ctx.context if isinstance(ctx.context, dict) else {}
     raw_agent_id = inner.get("agent_id")
@@ -584,319 +503,12 @@ async def create_vulnerability_report(
         poc_description=poc_description,
         poc_script_code=poc_script_code,
         remediation_steps=remediation_steps,
-        evidence=evidence,
-        assumptions=assumptions,
-        fix_effort=fix_effort,
         cvss_breakdown=cvss_breakdown,
         endpoint=endpoint,
         method=method,
         cve=cve,
         cwe=cwe,
         code_locations=code_locations,
-        fix_pr_body=fix_pr_body,
-        agent_id=agent_id,
-        agent_name=agent_name,
-    )
-    return json.dumps(result, ensure_ascii=False, default=str)
-
-
-_DEP_SEVERITY_FROM_CVSS = {
-    (9.0, 10.0): "critical",
-    (7.0, 9.0): "high",
-    (4.0, 7.0): "medium",
-    (0.0, 4.0): "low",
-}
-
-
-def _dependency_severity(advisory_cvss: float | None) -> tuple[float, str]:
-    if advisory_cvss is None:
-        return 0.0, "medium"
-    score = max(0.0, min(10.0, advisory_cvss))
-    for (lo, hi), label in _DEP_SEVERITY_FROM_CVSS.items():
-        if lo <= score < hi or (hi == 10.0 and score == 10.0):
-            return score, label
-    return score, "none"
-
-
-def _build_dependency_metadata(
-    *,
-    package_name: str,
-    installed_version: str,
-    package_ecosystem: str,
-    fixed_version: str | None,
-) -> dict[str, str]:
-    metadata = {
-        "package_name": package_name.strip(),
-        "installed_version": installed_version.strip(),
-    }
-    if package_ecosystem and package_ecosystem.strip():
-        metadata["package_ecosystem"] = package_ecosystem.strip()
-    if fixed_version and fixed_version.strip():
-        metadata["fixed_version"] = fixed_version.strip()
-    return metadata
-
-
-def _build_dependency_evidence(
-    *,
-    cve: str,
-    package_name: str,
-    installed_version: str,
-    fixed_version: str | None,
-) -> str:
-    evidence = (
-        f"**Advisory evidence:** `{cve}` applies to `{package_name}` "
-        f"at installed version `{installed_version}`."
-    )
-    if fixed_version and fixed_version.strip():
-        evidence += f" The advisory is fixed in `{fixed_version.strip()}`."
-    return evidence
-
-
-async def _do_create_dependency(
-    *,
-    title: str,
-    description: str,
-    target: str,
-    cve: str,
-    package_name: str,
-    installed_version: str,
-    impact: str,
-    remediation_steps: str,
-    assumptions: str,
-    package_ecosystem: str | None,
-    fixed_version: str | None,
-    cwe: str | None,
-    advisory_cvss: float | None,
-    technical_analysis: str | None,
-    fix_effort: str,
-    agent_id: str | None = None,
-    agent_name: str | None = None,
-) -> dict[str, Any]:
-    errors: list[str] = []
-    required = {
-        "title": title,
-        "description": description,
-        "target": target,
-        "package_name": package_name,
-        "installed_version": installed_version,
-        "package_ecosystem": package_ecosystem,
-        "impact": impact,
-        "remediation_steps": remediation_steps,
-        "assumptions": assumptions,
-    }
-    for name, value in required.items():
-        if not str(value or "").strip():
-            errors.append(f"{name} cannot be empty")
-
-    parsed_cve = _extract_cve(cve or "")
-    cve_err = _validate_cve(parsed_cve)
-    if cve_err:
-        errors.append(cve_err)
-
-    if cwe:
-        cwe = _extract_cwe(cwe)
-        cwe_err = _validate_cwe(cwe)
-        if cwe_err:
-            errors.append(cwe_err)
-
-    fix_effort = (fix_effort or "").strip().lower()
-    if fix_effort not in _VALID_FIX_EFFORT:
-        errors.append(
-            f"Invalid fix_effort: {fix_effort!r}. Must be one of: {sorted(_VALID_FIX_EFFORT)}"
-        )
-
-    if advisory_cvss is not None and not 0.0 <= advisory_cvss <= 10.0:
-        errors.append(f"advisory_cvss must be between 0.0 and 10.0, got {advisory_cvss}")
-
-    if errors:
-        return {"success": False, "error": "Validation failed", "errors": errors}
-
-    cvss_score, severity = _dependency_severity(advisory_cvss)
-    dependency_metadata = _build_dependency_metadata(
-        package_name=package_name,
-        installed_version=installed_version,
-        package_ecosystem=package_ecosystem,
-        fixed_version=fixed_version,
-    )
-    evidence = _build_dependency_evidence(
-        cve=parsed_cve,
-        package_name=package_name.strip(),
-        installed_version=installed_version.strip(),
-        fixed_version=fixed_version,
-    )
-
-    try:
-        from strix.report.state import get_global_report_state
-
-        report_state = get_global_report_state()
-        if report_state is None:
-            logger.warning("No global report state; dependency report not persisted")
-            return {
-                "success": True,
-                "message": f"Dependency finding '{title}' created (not persisted)",
-                "warning": "Report could not be persisted - report state unavailable",
-            }
-
-        from strix.report.dedupe import check_duplicate
-
-        existing = report_state.get_existing_vulnerabilities()
-        candidate = {
-            "title": title,
-            "description": description,
-            "target": target,
-            "cve": parsed_cve,
-            "dependency_metadata": dependency_metadata,
-            "technical_analysis": technical_analysis,
-        }
-        dedupe = await check_duplicate(candidate, existing)
-        if dedupe.get("is_duplicate"):
-            duplicate_id = dedupe.get("duplicate_id", "")
-            return {
-                "success": False,
-                "error": (
-                    f"Potential duplicate (id={duplicate_id[:8]}...) — "
-                    "do not re-report the same dependency finding"
-                ),
-                "duplicate_of": duplicate_id,
-                "confidence": dedupe.get("confidence", 0.0),
-                "reason": dedupe.get("reason", ""),
-            }
-
-        report_id = report_state.add_vulnerability_report(
-            title=title,
-            description=description,
-            severity=severity,
-            impact=impact,
-            target=target,
-            technical_analysis=technical_analysis,
-            remediation_steps=remediation_steps,
-            evidence=evidence,
-            assumptions=assumptions,
-            fix_effort=fix_effort,
-            cvss=cvss_score if advisory_cvss is not None else None,
-            cve=parsed_cve,
-            cwe=cwe,
-            finding_class="dependency_cve",
-            dependency_metadata=dependency_metadata,
-            agent_id=agent_id if isinstance(agent_id, str) else None,
-            agent_name=agent_name if isinstance(agent_name, str) else None,
-        )
-    except (ImportError, AttributeError) as e:
-        logger.exception("create_dependency_report persistence failed")
-        return {"success": False, "error": f"Failed to create dependency report: {e!s}"}
-    else:
-        logger.info(
-            "Dependency report created: id=%s cve=%s package=%s severity=%s",
-            report_id,
-            parsed_cve,
-            package_name,
-            severity,
-        )
-        return {
-            "success": True,
-            "message": f"Dependency finding '{title}' created successfully",
-            "report_id": report_id,
-            "severity": severity,
-            "cve": parsed_cve,
-        }
-
-
-@function_tool(timeout=180, strict_mode=False)
-async def create_dependency_report(
-    ctx: RunContextWrapper,
-    title: str,
-    description: str,
-    target: str,
-    cve: str,
-    package_name: str,
-    installed_version: str,
-    impact: str,
-    remediation_steps: str,
-    assumptions: str,
-    package_ecosystem: str,
-    fixed_version: str | None = None,
-    cwe: str | None = None,
-    advisory_cvss: float | None = None,
-    technical_analysis: str | None = None,
-    fix_effort: str = "low",
-) -> str:
-    """File a known-CVE dependency (SCA) finding — one report per CVE x package.
-
-    Use this instead of ``create_vulnerability_report`` when the finding
-    is a **known-CVE supply-chain issue**: a vulnerable third-party
-    package/version identified from a lockfile, manifest, or SBOM. Unlike
-    a dynamic finding, you do NOT need to trigger the vulnerability with a
-    live PoC — a verified advisory + the affected installed version is the
-    evidence.
-
-    **When to file**:
-
-    - A dependency is pinned to a version covered by a published CVE.
-    - You have verified the CVE ID and the installed version falls in the
-      affected range (use ``web_search`` if unsure).
-
-    **When NOT to file**:
-
-    - Dynamically-proven vulnerabilities → use
-      ``create_vulnerability_report`` (``finding_class`` dynamic).
-    - Outdated-but-not-vulnerable dependencies with no CVE.
-    - Re-reporting the same CVE/package already filed.
-
-    **Reachability**: do NOT silently downgrade or suppress a finding
-    because the vulnerable code path may be unreachable — instead state
-    reachability as an ``assumptions`` / confidence factor. Report the
-    finding; let the reader weigh exploitability.
-
-    **Formatting**: use markdown in text fields (``**bold**``, ``inline
-    code`` for package/version identifiers, fenced code blocks for
-    manifest excerpts). No internal paths/tooling/agent references.
-
-    Args:
-        title: e.g. ``"CVE-2024-1234 in lodash 4.17.20 (prototype pollution)"``.
-        description: What the CVE is and why the pinned version is affected.
-        target: Affected repository / project / manifest.
-        cve: ``CVE-YYYY-NNNNN`` — required and must be verified.
-        package_name: Affected package name (e.g. ``lodash``).
-        installed_version: The version currently pinned/installed.
-        impact: What the CVE enables; business risk in this context.
-        remediation_steps: How to fix (usually upgrade to a fixed version).
-        assumptions: Exploitability/reachability assumptions & confidence.
-        package_ecosystem: e.g. ``npm`` / ``pypi`` / ``maven`` / ``go``.
-        fixed_version: First non-vulnerable version, if known.
-        cwe: ``CWE-NNN`` (most specific) if certain, else omit.
-        advisory_cvss: Published advisory base score (0.0-10.0) if known;
-            drives severity. Omit if unknown (defaults to medium).
-        technical_analysis: Optional deeper mechanism/root-cause detail.
-        fix_effort: One of ``trivial`` / ``low`` / ``medium`` / ``high``
-            (dependency upgrades are usually ``trivial``/``low``).
-    """
-    inner = ctx.context if isinstance(ctx.context, dict) else {}
-    raw_agent_id = inner.get("agent_id")
-    agent_id = raw_agent_id if isinstance(raw_agent_id, str) else None
-    agent_name = None
-    coordinator = inner.get("coordinator")
-    if agent_id is not None and coordinator is not None:
-        names = getattr(coordinator, "names", {})
-        if isinstance(names, dict):
-            raw_agent_name = names.get(agent_id)
-            agent_name = raw_agent_name if isinstance(raw_agent_name, str) else None
-
-    result = await _do_create_dependency(
-        title=title,
-        description=description,
-        target=target,
-        cve=cve,
-        package_name=package_name,
-        installed_version=installed_version,
-        impact=impact,
-        remediation_steps=remediation_steps,
-        assumptions=assumptions,
-        package_ecosystem=package_ecosystem,
-        fixed_version=fixed_version,
-        cwe=cwe,
-        advisory_cvss=advisory_cvss,
-        technical_analysis=technical_analysis,
-        fix_effort=fix_effort,
         agent_id=agent_id,
         agent_name=agent_name,
     )

tests/test_reporting_fields.py

@@ -1,538 +0,0 @@
-"""Tests for restored report fields, SCA tool, and report formatting guidance."""
-
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-import pytest
-
-from strix.report.dedupe import (
-    _check_dependency_duplicate,
-    _prepare_report_for_comparison,
-    check_duplicate,
-)
-from strix.report.state import ReportState, set_global_report_state
-from strix.tools.finish.tool import finish_scan
-from strix.tools.reporting.tool import (
-    _do_create,
-    _do_create_dependency,
-    create_dependency_report,
-    create_vulnerability_report,
-)
-
-
-if TYPE_CHECKING:
-    from pathlib import Path
-
-
-_CVSS = {
-    "attack_vector": "N",
-    "attack_complexity": "L",
-    "privileges_required": "N",
-    "user_interaction": "N",
-    "scope": "U",
-    "confidentiality": "H",
-    "integrity": "H",
-    "availability": "H",
-}
-
-
-@pytest.fixture
-def report_state(tmp_path: Path, monkeypatch: pytest.MonkeyPatch) -> ReportState:
-    monkeypatch.chdir(tmp_path)
-    state = ReportState(run_name="test-run")
-    set_global_report_state(state)
-    return state
-
-
-async def test_create_report_persists_new_fields(report_state: ReportState) -> None:
-    result = await _do_create(
-        title="Reflected XSS in search",
-        description="q reflects unencoded input.",
-        impact="Session theft.",
-        target="https://app.example.com",
-        technical_analysis="Input interpolated into HTML.",
-        poc_description="1. open /search?q=<payload>",
-        poc_script_code="GET /search?q=<script>alert(1)</script>",
-        remediation_steps="Context-encode output.",
-        evidence="Response echoes the payload verbatim.",
-        assumptions="Assumes a victim opens a crafted link.",
-        fix_effort="LOW",
-        cvss_breakdown=_CVSS,
-        endpoint="/search",
-        method="GET",
-        cve=None,
-        cwe="CWE-79",
-        code_locations=None,
-        fix_pr_body="## Fix\nEncode output.",
-    )
-    assert result["success"] is True
-    report = report_state.vulnerability_reports[0]
-    assert report["evidence"] == "Response echoes the payload verbatim."
-    assert report["assumptions"] == "Assumes a victim opens a crafted link."
-    assert report["fix_effort"] == "low"
-    assert report["fix_pr_body"] == "## Fix\nEncode output."
-    assert report["finding_class"] == "dynamic"
-
-
-async def test_create_report_requires_evidence_and_assumptions(
-    report_state: ReportState,
-) -> None:
-    result = await _do_create(
-        title="X",
-        description="d",
-        impact="i",
-        target="t",
-        technical_analysis="ta",
-        poc_description="p",
-        poc_script_code="c",
-        remediation_steps="r",
-        evidence="   ",
-        assumptions="",
-        fix_effort="low",
-        cvss_breakdown=_CVSS,
-        endpoint=None,
-        method=None,
-        cve=None,
-        cwe=None,
-        code_locations=None,
-    )
-    assert result["success"] is False
-    joined = " ".join(result["errors"])
-    assert "Evidence" in joined
-    assert "Assumptions" in joined
-    assert not report_state.vulnerability_reports
-
-
-async def test_create_report_rejects_invalid_fix_effort(report_state: ReportState) -> None:
-    result = await _do_create(
-        title="X",
-        description="d",
-        impact="i",
-        target="t",
-        technical_analysis="ta",
-        poc_description="p",
-        poc_script_code="c",
-        remediation_steps="r",
-        evidence="e",
-        assumptions="a",
-        fix_effort="enormous",
-        cvss_breakdown=_CVSS,
-        endpoint=None,
-        method=None,
-        cve=None,
-        cwe=None,
-        code_locations=None,
-    )
-    assert result["success"] is False
-    assert any("fix_effort" in e for e in result["errors"])
-    assert not report_state.vulnerability_reports
-
-
-async def test_dependency_report_sets_class_and_metadata(report_state: ReportState) -> None:
-    result = await _do_create_dependency(
-        title="CVE-2021-23337 in lodash 4.17.20",
-        description="Command injection via template.",
-        target="repo/package.json",
-        cve="CVE-2021-23337",
-        package_name="lodash",
-        installed_version="4.17.20",
-        impact="Arbitrary command execution.",
-        remediation_steps="Upgrade to 4.17.21.",
-        assumptions="Assumes the template sink is reachable.",
-        package_ecosystem="npm",
-        fixed_version="4.17.21",
-        cwe="CWE-94",
-        advisory_cvss=7.2,
-        technical_analysis=None,
-        fix_effort="trivial",
-    )
-    assert result["success"] is True
-    report = report_state.vulnerability_reports[0]
-    assert report["finding_class"] == "dependency_cve"
-    assert report["cve"] == "CVE-2021-23337"
-    assert report["severity"] == "high"
-    assert report["evidence"] == (
-        "**Advisory evidence:** `CVE-2021-23337` applies to `lodash` "
-        "at installed version `4.17.20`. The advisory is fixed in `4.17.21`."
-    )
-    assert report["dependency_metadata"] == {
-        "package_name": "lodash",
-        "installed_version": "4.17.20",
-        "package_ecosystem": "npm",
-        "fixed_version": "4.17.21",
-    }
-
-
-async def test_dependency_report_with_zero_cvss_remains_low_severity(
-    report_state: ReportState,
-) -> None:
-    result = await _do_create_dependency(
-        title="CVE-2024-0001 in sample 1.0.0",
-        description="Published advisory affects the pinned version.",
-        target="repo/package.json",
-        cve="CVE-2024-0001",
-        package_name="sample",
-        installed_version="1.0.0",
-        impact="Low-impact dependency advisory.",
-        remediation_steps="Upgrade to 1.0.1.",
-        assumptions="Assumes the package is included in deployed builds.",
-        package_ecosystem="npm",
-        fixed_version="1.0.1",
-        cwe=None,
-        advisory_cvss=0.0,
-        technical_analysis=None,
-        fix_effort="low",
-    )
-
-    assert result["success"] is True
-    assert result["severity"] == "low"
-    report = report_state.vulnerability_reports[0]
-    assert report["severity"] == "low"
-    assert report["cvss"] == 0.0
-
-
-async def test_dependency_report_dedupe_candidate_includes_dependency_metadata(
-    report_state: ReportState,
-    monkeypatch: pytest.MonkeyPatch,
-) -> None:
-    captured: dict[str, object] = {}
-
-    async def fake_check_duplicate(
-        candidate: dict[str, object],
-        existing: list[dict[str, object]],
-    ) -> dict[str, object]:
-        captured["candidate"] = candidate
-        captured["existing"] = existing
-        return {"is_duplicate": False}
-
-    monkeypatch.setattr("strix.report.dedupe.check_duplicate", fake_check_duplicate)
-    report_state.vulnerability_reports.append(
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in other 1.0.0",
-            "severity": "low",
-            "timestamp": "2026-01-01 00:00:00 UTC",
-            "description": "Existing dependency finding.",
-            "target": "repo/package.json",
-            "cve": "CVE-2024-0001",
-            "dependency_metadata": {
-                "package_name": "other",
-                "installed_version": "1.0.0",
-                "package_ecosystem": "npm",
-            },
-        }
-    )
-
-    result = await _do_create_dependency(
-        title="CVE-2024-0001 in sample 1.0.0",
-        description="Published advisory affects the pinned version.",
-        target="repo/package.json",
-        cve="CVE-2024-0001",
-        package_name="sample",
-        installed_version="1.0.0",
-        impact="Low-impact dependency advisory.",
-        remediation_steps="Upgrade to 1.0.1.",
-        assumptions="Assumes the package is included in deployed builds.",
-        package_ecosystem="npm",
-        fixed_version="1.0.1",
-        cwe=None,
-        advisory_cvss=0.0,
-        technical_analysis=None,
-        fix_effort="low",
-    )
-
-    assert result["success"] is True
-    assert captured["candidate"] == {
-        "title": "CVE-2024-0001 in sample 1.0.0",
-        "description": "Published advisory affects the pinned version.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.0",
-            "package_ecosystem": "npm",
-            "fixed_version": "1.0.1",
-        },
-        "technical_analysis": None,
-    }
-
-
-async def test_dependency_report_rejects_bad_cve(report_state: ReportState) -> None:
-    result = await _do_create_dependency(
-        title="bad",
-        description="d",
-        target="t",
-        cve="not-a-cve",
-        package_name="pkg",
-        installed_version="1.0.0",
-        impact="i",
-        remediation_steps="r",
-        assumptions="a",
-        package_ecosystem="npm",
-        fixed_version=None,
-        cwe=None,
-        advisory_cvss=None,
-        technical_analysis=None,
-        fix_effort="low",
-    )
-    assert result["success"] is False
-    assert not report_state.vulnerability_reports
-
-
-async def test_dependency_report_requires_ecosystem(report_state: ReportState) -> None:
-    result = await _do_create_dependency(
-        title="CVE-2024-0001 in sample 1.0.0",
-        description="Published advisory affects the pinned version.",
-        target="repo/package.json",
-        cve="CVE-2024-0001",
-        package_name="sample",
-        installed_version="1.0.0",
-        impact="Low-impact dependency advisory.",
-        remediation_steps="Upgrade to 1.0.1.",
-        assumptions="Assumes the package is included in deployed builds.",
-        package_ecosystem="",
-        fixed_version="1.0.1",
-        cwe=None,
-        advisory_cvss=0.0,
-        technical_analysis=None,
-        fix_effort="low",
-    )
-
-    assert result["success"] is False
-    assert any("package_ecosystem" in error for error in result["errors"])
-    assert not report_state.vulnerability_reports
-
-
-def test_dedupe_comparison_preserves_cve_identity() -> None:
-    cleaned = _prepare_report_for_comparison(
-        {
-            "title": "CVE-2021-23337 in lodash",
-            "description": "Pinned vulnerable dependency.",
-            "target": "repo/package.json",
-            "cve": "CVE-2021-23337",
-            "dependency_metadata": {"package_name": "lodash"},
-        }
-    )
-
-    assert cleaned["cve"] == "CVE-2021-23337"
-    assert cleaned["dependency_metadata"] == {"package_name": "lodash"}
-
-
-async def test_dependency_dedupe_uses_cve_package_identity() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in other",
-            "cve": "CVE-2024-0001",
-            "dependency_metadata": {
-                "package_name": "other",
-                "installed_version": "1.0.0",
-                "package_ecosystem": "npm",
-            },
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Similar advisory prose.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.0",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    result = await check_duplicate(candidate, existing)
-
-    assert result["is_duplicate"] is False
-    assert result["confidence"] == 1.0
-
-
-async def test_dependency_dedupe_rejects_same_cve_package_identity() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in sample",
-            "cve": "CVE-2024-0001",
-            "dependency_metadata": {
-                "package_name": "sample",
-                "installed_version": "1.0.0",
-                "package_ecosystem": "npm",
-            },
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample with different prose",
-        "description": "Different prose for the same dependency identity.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    result = await check_duplicate(candidate, existing)
-
-    assert result["is_duplicate"] is True
-    assert result["duplicate_id"] == "vuln-0001"
-    assert result["confidence"] == 1.0
-
-
-async def test_dependency_dedupe_detects_legacy_same_cve_package() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in npm sample package",
-            "description": "Legacy dependency finding without structured metadata.",
-            "cve": "CVE-2024-0001",
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Different prose for the same dependency identity.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    result = await check_duplicate(candidate, existing)
-
-    assert result["is_duplicate"] is True
-    assert result["duplicate_id"] == "vuln-0001"
-    assert result["confidence"] == 1.0
-
-
-def test_dependency_dedupe_defers_unclear_legacy_same_cve() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 dependency finding",
-            "description": "Legacy dependency finding without package identity.",
-            "cve": "CVE-2024-0001",
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Candidate dependency finding.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    assert _check_dependency_duplicate(candidate, existing) is None
-
-
-def test_dependency_dedupe_defers_legacy_package_substring_match() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in sample-package",
-            "description": "Legacy dependency finding for a different package.",
-            "cve": "CVE-2024-0001",
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Candidate dependency finding.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    assert _check_dependency_duplicate(candidate, existing) is None
-
-
-def test_dependency_dedupe_defers_legacy_ecosystem_mismatch() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in npm sample",
-            "description": "Legacy dependency finding for a different ecosystem.",
-            "cve": "CVE-2024-0001",
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Candidate dependency finding.",
-        "target": "repo/requirements.txt",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "pypi",
-        },
-    }
-
-    assert _check_dependency_duplicate(candidate, existing) is None
-
-
-def test_dependency_dedupe_matches_structured_missing_ecosystem() -> None:
-    existing = [
-        {
-            "id": "vuln-0001",
-            "title": "CVE-2024-0001 in sample",
-            "cve": "CVE-2024-0001",
-            "dependency_metadata": {
-                "package_name": "sample",
-                "installed_version": "1.0.0",
-            },
-        }
-    ]
-    candidate = {
-        "title": "CVE-2024-0001 in sample",
-        "description": "Candidate dependency finding.",
-        "target": "repo/package.json",
-        "cve": "CVE-2024-0001",
-        "dependency_metadata": {
-            "package_name": "sample",
-            "installed_version": "1.0.1",
-            "package_ecosystem": "npm",
-        },
-    }
-
-    result = _check_dependency_duplicate(candidate, existing)
-
-    assert result is not None
-    assert result["is_duplicate"] is True
-    assert result["duplicate_id"] == "vuln-0001"
-
-
-def test_tool_descriptions_include_formatting_guidance() -> None:
-    vuln_desc = create_vulnerability_report.description
-    assert "markdown" in vuln_desc.lower()
-    assert "fenced code" in vuln_desc.lower()
-
-    finish_desc = finish_scan.description
-    assert "markdown" in finish_desc.lower()
-    assert "# Executive Summary" in finish_desc
-
-    dep_desc = create_dependency_report.description
-    assert "cve" in dep_desc.lower()
-    assert "reachab" in dep_desc.lower()
-
-
-def test_vuln_tool_exposes_new_params() -> None:
-    props = create_vulnerability_report.params_json_schema["properties"]
-    for field in ("evidence", "assumptions", "fix_effort", "fix_pr_body"):
-        assert field in props
-
-    dep_props = create_dependency_report.params_json_schema["properties"]
-    for field in ("package_name", "installed_version", "cve", "advisory_cvss"):
-        assert field in dep_props
-    assert "package_ecosystem" in create_dependency_report.params_json_schema["required"]

tests/test_skill_dir_extension.py

@@ -1,120 +0,0 @@
-from pathlib import Path
-
-import pytest
-
-import strix.skills as skills_mod
-from strix.skills import (
-    get_all_skill_names,
-    get_available_skills,
-    load_skills,
-    register_skill_dir,
-    registered_skill_dirs,
-    skill_search_dirs,
-    validate_requested_skills,
-)
-
-
-@pytest.fixture(autouse=True)
-def _clear_extra_dirs() -> None:
-    original = list(skills_mod._EXTRA_SKILL_DIRS)
-    skills_mod._EXTRA_SKILL_DIRS.clear()
-    try:
-        yield
-    finally:
-        skills_mod._EXTRA_SKILL_DIRS[:] = original
-
-
-def _write_skill(root: Path, category: str, name: str, body: str) -> None:
-    category_dir = root / category
-    category_dir.mkdir(parents=True, exist_ok=True)
-    (category_dir / f"{name}.md").write_text(body, encoding="utf-8")
-
-
-def _write_root_skill(root: Path, name: str, body: str) -> None:
-    root.mkdir(parents=True, exist_ok=True)
-    (root / f"{name}.md").write_text(body, encoding="utf-8")
-
-
-def test_no_registration_leaves_builtin_only() -> None:
-    assert registered_skill_dirs() == ()
-    builtin = skills_mod.get_strix_resource_path("skills")
-    assert skill_search_dirs() == (builtin,)
-    assert {"nmap", "subfinder"}.issubset(get_available_skills()["tooling"])
-
-
-def test_register_is_idempotent_and_ordered(tmp_path: Path) -> None:
-    a = tmp_path / "a"
-    b = tmp_path / "b"
-    a.mkdir()
-    b.mkdir()
-
-    register_skill_dir(a)
-    register_skill_dir(b)
-    register_skill_dir(a)
-
-    # Most recently registered wins → highest precedence first.
-    assert registered_skill_dirs() == (b, a)
-
-
-def test_registered_dir_adds_new_skill(tmp_path: Path) -> None:
-    _write_skill(tmp_path, "extra", "widget", "widget body")
-    register_skill_dir(tmp_path)
-
-    assert "widget" in get_all_skill_names()
-    assert get_available_skills()["extra"] == ["widget"]
-    assert load_skills(["widget"]) == {"widget": "widget body"}
-
-
-def test_registered_root_skill_is_discoverable_and_valid(tmp_path: Path) -> None:
-    _write_root_skill(tmp_path, "widget", "widget body")
-    register_skill_dir(tmp_path)
-
-    assert "widget" in get_all_skill_names()
-    assert get_available_skills()["root"] == ["widget"]
-    assert validate_requested_skills(["widget"]) is None
-    assert validate_requested_skills(["root/widget"]) is None
-    assert load_skills(["widget"]) == {"widget": "widget body"}
-    assert load_skills(["root/widget"]) == {"widget": "widget body"}
-
-
-def test_ambiguous_bare_skill_requires_qualified_name(tmp_path: Path) -> None:
-    _write_skill(tmp_path, "alpha", "widget", "alpha body")
-    _write_skill(tmp_path, "beta", "widget", "beta body")
-    register_skill_dir(tmp_path)
-
-    assert "widget" in get_all_skill_names()
-    assert get_available_skills()["alpha"] == ["widget"]
-    assert get_available_skills()["beta"] == ["widget"]
-    assert validate_requested_skills(["alpha/widget"]) is None
-    assert validate_requested_skills(["beta/widget"]) is None
-
-    error = validate_requested_skills(["widget"])
-    assert error is not None
-    assert "Ambiguous skill name" in error
-    assert "alpha/widget" in error
-    assert "beta/widget" in error
-
-    assert load_skills(["widget"]) == {}
-    assert load_skills(["alpha/widget"]) == {"widget": "alpha body"}
-    assert load_skills(["beta/widget"]) == {"widget": "beta body"}
-
-
-def test_registered_dir_overrides_builtin_skill(tmp_path: Path) -> None:
-    _write_skill(tmp_path, "coordination", "root_agent", "overridden root agent")
-    register_skill_dir(tmp_path)
-
-    loaded = load_skills(["coordination/root_agent"])
-    assert loaded["root_agent"] == "overridden root agent"
-
-
-def test_builtin_skill_still_loads_when_not_overridden(tmp_path: Path) -> None:
-    _write_skill(tmp_path, "extra", "widget", "widget body")
-    register_skill_dir(tmp_path)
-
-    # A packaged skill the registered dir does not shadow still resolves.
-    assert load_skills(["scan_modes/deep"]).get("deep")
-
-
-def test_missing_skill_is_skipped(tmp_path: Path) -> None:
-    register_skill_dir(tmp_path)
-    assert load_skills(["does_not_exist"]) == {}

uv.lock

@@ -171,18 +171,6 @@ wheels = [
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-[[package]]
-name = "apscheduler"
-version = "3.11.3"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "tzlocal" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/8c/6b/eeff360196bb20b312c9e762a820fd1b2c6d809466c755ef57863478e454/apscheduler-3.11.3.tar.gz", hash = "sha256:cd2fcc9330039a81a5893472ad49facf23a6d5604cbe1d918c835c6de7834d5a", size = 110312, upload-time = "2026-06-28T19:39:22.493Z" }
-wheels = [
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-]
-
 [[package]]
 name = "ast-serialize"
 version = "0.5.0"
@@ -232,50 +220,6 @@ wheels = [
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 ]
 
-[[package]]
-name = "azure-core"
-version = "1.41.0"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "requests" },
-    { name = "typing-extensions" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/a6/f3/b416179e408990df5db0d516283022dde0f5d0111d98c1a848e41853e81c/azure_core-1.41.0.tar.gz", hash = "sha256:f46ff5dfcd230f25cf1c19e8a34b8dc08a337b2503e268bb600a16c00db8ad5a", size = 381042, upload-time = "2026-05-07T23:30:54.302Z" }
-wheels = [
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-]
-
-[[package]]
-name = "azure-identity"
-version = "1.25.3"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "azure-core" },
-    { name = "cryptography" },
-    { name = "msal" },
-    { name = "msal-extensions" },
-    { name = "typing-extensions" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/c5/0e/3a63efb48aa4a5ae2cfca61ee152fbcb668092134d3eb8bfda472dd5c617/azure_identity-1.25.3.tar.gz", hash = "sha256:ab23c0d63015f50b630ef6c6cf395e7262f439ce06e5d07a64e874c724f8d9e6", size = 286304, upload-time = "2026-03-13T01:12:20.892Z" }
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-]
-
-[[package]]
-name = "azure-storage-blob"
-version = "12.30.0"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "azure-core" },
-    { name = "cryptography" },
-    { name = "isodate" },
-    { name = "typing-extensions" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/3b/48/84a820d898267f662b5c06f7cd76fdb8a9e272b44aa9376cef3ec0f6a294/azure_storage_blob-12.30.0.tar.gz", hash = "sha256:2cd74d4d5731e5eb6b8d5c5056ee115a5e88f8fdf22517b739836fda685018be", size = 618229, upload-time = "2026-06-08T11:45:35.575Z" }
-wheels = [
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-]
-
 [[package]]
 name = "backoff"
 version = "2.2.1"
@@ -523,69 +467,54 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/d1/d6/3965ed04c63042e047cb6a3e6ed1a63a35087b6a609aa3a15ed8ac56c221/colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6", size = 25335, upload-time = "2022-10-25T02:36:20.889Z" },
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-[[package]]
-name = "croniter"
-version = "6.2.4"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
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-]
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